A patch that imparts unconditional stability to explicit integrators for Langevin-like equations

نویسندگان

  • Nawaf Bou-Rabee
  • Eric Vanden-Eijnden
چکیده

This paper extends the results in [8] to stochastic differential equations (SDEs) arising in molecular dynamics. It implements a patch to explicit integrators that consists of a Metropolis–Hastings step. The ‘patched integrator’ preserves the SDE’s equilibrium distribution and is accurate on finite time intervals. As a corollary this paper proves the integrator’s accuracy in estimating finite-time dynamics along an infinitely long solution a first in molecular dynamics. The paper also covers multiple time-steps, holonomic constraints and scalability. Finally, the paper provides numerical tests supporting the theory. ! 2011 Elsevier Inc. All rights reserved.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Long-Run Behavior of Variational Integrators in the Stochastic Context

This paper presents a Lie-Trotter splitting for inertial Langevin equations (Geometric Langevin Algorithm) and analyzes its long-time statistical properties.The splitting is defined as a composition of a variational integrator with an Ornstein-Uhlenbeck flow. Assuming the exact solution and the splitting are geometrically ergodic, the paper proves the discrete invariant measure of the splitting...

متن کامل

Long-Run Accuracy of Variational Integrators in the Stochastic Context

This paper presents a Lie–Trotter splitting for inertial Langevin equations (geometric Langevin algorithm) and analyzes its long-time statistical properties. The splitting is defined as a composition of a variational integrator with an Ornstein–Uhlenbeck flow. Assuming that the exact solution and the splitting are geometrically ergodic, the paper proves the discrete invariant measure of the spl...

متن کامل

Numerical integration of the extended variable generalized Langevin equation with a positive Prony representable memory kernel.

Generalized Langevin dynamics (GLD) arise in the modeling of a number of systems, ranging from structured fluids that exhibit a viscoelastic mechanical response, to biological systems, and other media that exhibit anomalous diffusive phenomena. Molecular dynamics (MD) simulations that include GLD in conjunction with external and/or pairwise forces require the development of numerical integrator...

متن کامل

Temporal Integrators for Fluctuating Hydrodynamics

Including the effect of thermal fluctuations in traditional computational fluid dynamics requires developing numerical techniques for solving the stochastic partial differential equations of fluctuating hydrodynamics. These Langevin equations possess a special fluctuation-dissipation structure that needs to be preserved by spatio-temporal discretizations in order for the computed solution to re...

متن کامل

New Langevin and gradient thermostats for rigid body dynamics.

We introduce two new thermostats, one of Langevin type and one of gradient (Brownian) type, for rigid body dynamics. We formulate rotation using the quaternion representation of angular coordinates; both thermostats preserve the unit length of quaternions. The Langevin thermostat also ensures that the conjugate angular momenta stay within the tangent space of the quaternion coordinates, as requ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • J. Comput. Physics

دوره 231  شماره 

صفحات  -

تاریخ انتشار 2012